You've probably heard that Apple is using A9 processors from two different sources for the iPhone 6s and iPhone 6s Plus. One processor is from Samsung, and the other is from TSMC.
It's been confirmed via benchmarks that both processors perform similarly with no major differences in performance. With that said, each processor features a different die size, which was first noted by Chipworks. The Samsung processor is the smaller of the two. Physically, it's 96mm squared, while the TSMC A9 is 104.5 mm squared.
Chipworks conjectures that two different sources were used due to supply constraints. They also say that they are further researching both processors in an effort to gain better clarity.
Ultimately, it really doesn't mean much to the end user, but I know that curiosity gets the best of us at times. If you'd like to check to see who sourced your A9 processor, you can follow these simple steps.